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  "Description": "Publication-ready regional gene locus plots similar to\nthose produced by the web interface 'LocusZoom'\n<https://my.locuszoom.org>, but running locally in R. Genetic\nor genomic data with gene annotation tracks are plotted via R\nbase graphics, 'ggplot2' or 'plotly', allowing flexibility and\neasy customisation including laying out multiple locus plots on\nthe same page. It uses the 'LDlink' API\n<https://ldlink.nih.gov/?tab=apiaccess> to query linkage\ndisequilibrium data from the 1000 Genomes Project and can\noverlay this on plots <doi:10.1093/bioadv/vbaf006>.",
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  "Repository": "https://myles-lewis.r-universe.dev",
  "Date/Publication": "2026-10-09 13:07:48 UTC",
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  "Author": "Myles Lewis [aut, cre] (ORCID: <https://orcid.org/0000-0001-9365-5345>),\nTom Willis [ctb]",
  "Maintainer": "Myles Lewis <myles.lewis@qmul.ac.uk>",
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        "pos",
        "rsid",
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        "beta",
        "se",
        "OR",
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      "title": "Locus eQTL plot",
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      "topics": [
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    {
      "page": "genetrack_ly",
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      "topics": [
        "genetrack_ly"
      ]
    },
    {
      "page": "genetracks",
      "title": "Plot gene tracks",
      "topics": [
        "genetracks"
      ]
    },
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      "topics": [
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      "title": "Query UCSC for Recombination data",
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      "title": "SLE GWAS data subset",
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  "_vignettes": [
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      "source": "locuszoomr.Rmd",
      "filename": "locuszoomr.html",
      "title": "locuszoomr",
      "author": "Myles Lewis",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Example locus plot",
        "Accessing Ensembl databases",
        "Controlling the locus",
        "Obtaining LD information",
        "Add recombination rate",
        "Customise plots and labels",
        "Point shapes",
        "Customise gene tracks",
        "Plot gene annotation only",
        "Add eQTL data via LDlink",
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        "Add custom legend / features",
        "ggplot2 version",
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        "Plot all GWAS peaks",
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        "Citation",
        "References"
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      "created": "2021-11-17 18:06:53",
      "modified": "2026-10-05 07:48:08",
      "commits": 101
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      "title": "Zoom browser",
      "author": "Myles Lewis",
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        "Navigation",
        "Add recombination rate",
        "Add LD via LDlink",
        "Overlay eQTL data via LDlink",
        "Dual GWAS browsing",
        "Saving plots",
        "Citation",
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      "modified": "2026-10-09 08:24:53",
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