Package: locuszoomr
Title: Gene Locus Plot with Gene Annotations
Version: 0.3.9
Authors@R: 
    c(person(given = "Myles",family = "Lewis",
    role = c("aut", "cre"),
    email = "myles.lewis@qmul.ac.uk",
    comment = c(ORCID = "0000-0001-9365-5345")))
BugReports: https://github.com/myles-lewis/locuszoomr/issues
URL: https://github.com/myles-lewis/locuszoomr
Description: Publication-ready regional gene locus plots similar to
        those produced by the web interface 'LocusZoom'
        <https://my.locuszoom.org>, but running locally in R. Genetic
        or genomic data with gene annotation tracks are plotted via R
        base graphics, 'ggplot2' or 'plotly', allowing flexibility and
        easy customisation including laying out multiple locus plots on
        the same page. It uses the 'LDlink' API
        <https://ldlink.nih.gov/?tab=apiaccess> to query linkage
        disequilibrium data from the 1000 Genomes Project and can
        overlay this on plots <doi:10.1093/bioadv/vbaf006>.
Language: en-gb
License: GPL (>= 3)
Encoding: UTF-8
Depends: R (>= 3.5)
biocViews:
Imports: AnnotationFilter, BiocGenerics, cowplot, dplyr, ensembldb,
        GenomeInfoDb, GenomicRanges, gggrid, ggplot2, ggrepel,
        graphics, grDevices, grid, IRanges, LDlinkR, memoise, plotly,
        rlang, rtracklayer, zoo
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Suggests: AnnotationHub, EnsDb.Hsapiens.v75, knitr, rmarkdown
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libpng-dev libuv1-dev libxml2-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://myles-lewis.r-universe.dev
Date/Publication: 2026-03-27 15:28:45 UTC
RemoteUrl: https://github.com/myles-lewis/locuszoomr
RemoteRef: HEAD
RemoteSha: 633b51278d6100f39f60bb31d2a02fb2d1187ba9
NeedsCompilation: no
Packaged: 2026-07-04 05:52:48 UTC; root
Author: Myles Lewis [aut, cre] (ORCID: <https://orcid.org/0000-0001-9365-5345>)
Maintainer: Myles Lewis <myles.lewis@qmul.ac.uk>